Service / Technology Instance

About Electron Microscopy Image Processing, I2PC, Madrid, Spain

This platform will provide personalized support to Instruct projects requiring specialized processing of either electron or X-ray microscopy images. It will also help developers in integrating their methods into generally accessible analysis workflows.

The Instruct Image Processing Center (I2PC) in Madrid will assign personnel to this analysis, as well as the required computational resources.

Flagship Service/Technology

View All Electron Microscopy at Instruct

Instruments Available:

The Instruct Image Processing Center provide personalized support to Instruct projects requiring specialized processing of either electron or X-ray microscopy images. Currently our main offer is focused in the field of single particles analysis using Xmipp and Scipion softwares. Xmipp is a comprehensive suite of image processing algorithms with a strong emphasis in the analysis of single particles, although it is extending towards electron and X-ray tomography. Scipion, in turn, provides a multi-package workflow-oriented platform bridging several software suites, like EMAN, Spider, Relion, Bsoft, Frealign and ctffind. More information can be found at: http://xmipp.cnb.csic.es and http://scipion.cnb.csic.es/docs

User Guide

The Instruct Image Processing Center (I2PC) at the CNB-CSIC provide support for full EM image processing using SCIPION framework, including movie alignment, particle picking, classification 2D-3D, volume reconstruction and atomic structure determination. Scipion, provides a multi-package workflow-oriented platform bridging several software suites, like Xmipp, EMAN, Spider, Relion, Bsoft, Frealign, ctffind,... More information can be found at: http://scipion.cnb.csic.es

Instruct Centre

Centre for Image Processing

Centre for Image Processing

Universidad Autónoma de Madrid

Darwin 3

Madrid

Spain

www.i2pc.es

Electron Microscopy Image Processing, I2PC, Madrid, Spain

Contacts:

Blanca Elena Benitez Silva
Blanca Elena Benitez Silva
Consejo Superior de Investigaciones Cientificas CSIC
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Roberto Melero
Roberto Melero
Consejo Superior de Investigaciones Cientificas CSIC
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Ana Cuervo
Ana Cuervo
Consejo Superior de Investigaciones Cientificas CSIC
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